PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G084000.1.p
Common NameAP2-2, GLYMA_04G084000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 189aa    MW: 20817.6 Da    PI: 6.5288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G084000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-192877255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Glyma.04G084000.1.p 28 LYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 77
                         69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.13E-322787No hitNo description
PfamPF008475.7E-132777IPR001471AP2/ERF domain
PROSITE profilePS5103223.4062885IPR001471AP2/ERF domain
SMARTSM003801.8E-372891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-322886IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-222886IPR016177DNA-binding domain
PRINTSPR003671.7E-102940IPR001471AP2/ERF domain
PRINTSPR003671.7E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRVSTETEPE TKKIKRIRGG GDSSKHPLYR GVRMRNWGKW VSEIREPRKK SRIWLGTFPT  60
PEMAARAHDV AALSIKGPAA ILNFPHLANS LPRPASLAPR DVQAAAAKAA HMDPSSLSSL  120
VSAMDLSSAS DELSQIIELP SLESTDDGSV DLKKEFVFVD SLDAWMYQPP FGFDTEQDTG  180
FEGLMWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162490168ATERF1
3gcc_A2e-162490168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.548740.0meristem| root
Function -- GeneRIF ? help Back to Top
  1. miR156 regulates miR172 expression and controls the level of an AP2. The latter, either directly or indirectly, controls the expression of nonsymbiotic hemoglobin, which is essential for regulating the levels of nodulation.
    [PMID: 23980625]
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2284540.0FJ228454.1 Glycine max AP2 domain-containing transcription factor 2 (AP2-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239694.11e-137dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD31e-71DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLC9WA601e-137C9WA60_SOYBN; AP2 domain-containing transcription factor 2
STRINGGLYMA04G08901.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-73ERF family protein
Publications ? help Back to Top
  1. Yan Z, et al.
    miR172 regulates soybean nodulation.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1371-7
    [PMID:23980625]